Primary vs Secondary Headache: What’s the Difference?



Primary vs Secondary Headache: What’s the Difference?

Headaches are broadly classified as primary or secondary. Knowing the difference can help guide assessment, treatment and when medical review is appropriate.






Primary vs secondary headache upper cervical spine assessment by physiotherapist

Neck assessment can help determine whether musculoskeletal factors may contribute to a headache.


What Is the Difference Between a Primary and Secondary Headache?

A headache may be classified as primary or secondary. The distinction describes what is causing the headache rather than how severe the pain feels.

With a primary headache, the headache disorder is the main condition. With a secondary headache, another condition is considered to be causing the headache.

This distinction matters because two headaches can feel similar while needing different assessment or treatment. A careful history is usually the starting point, followed by an examination or further medical assessment when required.


What Are Primary Headaches?

Primary headaches are headache disorders that are not attributed to another underlying health condition. They can still be severe, recurring and disruptive to daily life.

Three well-known primary headache groups are:

Migraine

Migraine commonly causes recurring attacks and may involve throbbing pain, nausea, sensitivity to light or sound, and sometimes aura.

Tension-Type Headache

Tension-type headache commonly feels like pressure or tightness and often affects both sides of the head.

Cluster Headache

Cluster headache causes severe attacks, usually around one eye or temple, and often occurs in repeated periods or clusters.

The International Classification of Headache Disorders provides the internationally recognised classification of primary and secondary headache disorders.

What Are Secondary Headaches?

A secondary headache occurs when another disorder or health problem causes the headache. In these cases, identifying and managing the underlying cause is an important part of the care pathway.

Examples include headaches attributed to:

Neck disorders

A confirmed cervical source may produce a cervicogenic headache.

Head or neck trauma

Headache may develop after an injury, including some whiplash presentations.

Jaw disorders

Some temporomandibular disorders can contribute to headache and facial pain.

Medication or substances

Some medicines, medication overuse or substance withdrawal can cause secondary headache.

Infection or inflammation

Sinus infection, meningitis and other illnesses can sometimes cause headache.

Other medical conditions

Eye, vascular, neurological and other medical disorders can also cause secondary headaches.

Can Primary and Secondary Headaches Overlap?

Yes. Headache patterns can overlap, and a person can have more than one headache disorder. For example, someone with migraine may also have neck stiffness or jaw symptoms.

Likewise, having jaw tension or tenderness does not automatically establish a jaw-related headache. Clinicians consider the history, symptom behaviour, examination findings and relevant medical factors together.


Secondary headache jaw and upper neck movement demonstration with physiotherapist

Neck or jaw symptoms can provide useful clues, but they do not identify the headache type on their own.


Why Does the Correct Headache Type Matter?

Identifying the likely headache type helps determine the most appropriate next step. Primary headache disorders may benefit from medical management, trigger or pattern review and lifestyle strategies. Secondary headaches require attention to the condition causing them.

For example, confirmed cervicogenic headache may involve management of relevant neck movement, strength and function. A jaw-related presentation may need assessment of the jaw and surrounding structures. A new or unusual headache may need medical assessment before musculoskeletal treatment is considered.

What Can Suggest a Neck or Jaw Contribution?

Some features can make a musculoskeletal contribution worth assessing. However, no single feature confirms the diagnosis.

Neck movement

Headache consistently changes with particular neck movements or sustained neck positions.

Jaw symptoms

Headache occurs with jaw pain, restricted movement, clenching, chewing symptoms or other jaw complaints.

Injury history

The headache began after a relevant head or neck injury and follows a pattern that warrants assessment.

These clues need to be interpreted in context. Migraine and other primary headache disorders can also involve neck discomfort, muscle tenderness and movement sensitivity.

When Should You Seek Medical Help for a Headache?

Most headaches are not caused by a serious illness. However, some headache patterns need urgent medical attention or timely medical assessment.

Healthdirect provides further Australian guidance about headaches and when to seek medical care.

How Can Physiotherapy Help with Some Secondary Headaches?

Physiotherapy may be useful when assessment suggests a musculoskeletal contributor, particularly in a cervicogenic headache or some neck, jaw or post-whiplash presentations.

A physiotherapy assessment may consider:

  • your headache history and symptom pattern
  • neck movement and symptom response
  • upper cervical movement and joint findings
  • muscle strength, control and tenderness
  • jaw movement and associated symptoms where relevant
  • posture, work or activity factors when they influence symptoms
  • signs that indicate medical assessment is more appropriate

When cervicogenic headache is considered likely, management may include education, appropriate exercise, movement strategies and other physiotherapy approaches. Treatment should match the individual assessment rather than assuming that every headache with neck pain has a cervical cause.

Related Headache Guides

Primary vs Secondary Headache FAQs

What is the difference between a primary and secondary headache?

A primary headache is the headache disorder itself, such as migraine, tension-type headache or cluster headache. A secondary headache occurs because another condition or problem is causing the headache.

Is migraine a primary headache?

Yes. Migraine is classified as a primary headache disorder. However, people with migraine can also have neck pain, jaw symptoms or another headache disorder at the same time.

Does neck pain mean my headache is secondary?

No. Neck pain and stiffness can occur with migraine and other headache disorders. Cervicogenic headache is considered when there is evidence that a cervical disorder is contributing to the headache, rather than from neck tenderness or stiffness alone.

Can jaw problems cause a secondary headache?

Yes. Some temporomandibular disorders can be associated with headache. Jaw pain, clenching or clicking alone does not confirm the cause, so the overall symptom pattern should be assessed.

Can whiplash cause a secondary headache?

Yes. Headache can occur after head or neck trauma, including whiplash. The timing, symptom pattern, examination findings and any warning signs help guide whether physiotherapy or medical assessment is appropriate.

When should I worry about a headache?

Seek emergency medical help for a sudden severe headache or a headache with concerning symptoms such as confusion, neck stiffness, significant vision change, seizure, loss of balance, or fever with vomiting. See a doctor for headaches that are changing, worsening, frequent, disabling or begin after a head injury.

What to Do Next

If you are unsure whether your headache fits a primary or secondary pattern, the safest next step depends on your symptoms and history.

Start with the Headaches & Migraines guide if you would like to compare headache types. Arrange medical assessment first for a new, changing or unexplained headache, particularly when warning signs are present.

If your headache pattern appears related to your neck, jaw or previous neck injury and there are no urgent warning signs, a physiotherapist may assess whether musculoskeletal factors are contributing and discuss appropriate management or referral.


Choose your clinic and appointment pathway

Select a PhysioWorks clinic to continue to live booking, an appointment request or reception assistance.


Share this guide

Send this information to someone who may find it helpful.

References

  1. Headache Classification Committee of the International Headache Society. The International Classification of Headache Disorders, 3rd edition. Cephalalgia. 2018;38(1):1-211. doi:10.1177/0333102417738202.
  2. Healthdirect Australia. Headaches. Healthdirect Australia. Last reviewed May 2025. Accessed 11 August 2026.
  3. Anarte-Lazo E, Carvalho GF, Schwarz A, et al. Differentiating migraine, cervicogenic headache and asymptomatic individuals based on physical examination findings: a systematic review and meta-analysis. Cephalalgia. 2021;41(10):1090-1108. doi:10.1177/03331024211024935.
  4. Demont A, Luedtke K, May A, et al. Cervicogenic headache, an easy diagnosis? A systematic review and meta-analysis of diagnostic studies. Musculoskelet Sci Pract. 2022;62:102661. doi:10.1016/j.msksp.2022.102661.
  5. Becher B, Lozano-López C, Moreira de Castro-Carletti E, et al. Effectiveness of therapeutic exercise for the management of cervicogenic headache: a systematic review. Musculoskelet Sci Pract. 2023;66:102822. doi:10.1016/j.msksp.2023.102822.